Rapid detection of avian Eimeria species using denaturing gradient gel electrophoresis

Corresponding author: Alexandra Martynova-VanKley
 Department of Biotechnology
Stephen F. Austin State University
P.O.Box 6132, Nacogdoches
TX 75965, Tel: 936-468-6931
E-mail: avankley@sfasu.edu

NCBI accession numbers:

                Clone_176       EU044765
                Clone_69        EU044766
                Clone_200       EU044767
                Clone_323       EU044768
                Clone_144       EU044769
                Clone_141       EU044770
                Clone_206       EU044771
                Clone_60        EU044772
                Clone_93        EU044773
                Clone_325       EU044774
                Clone_131       EU044775
                Clone_165       EU044776
                Clone_143       EU044777
                Clone_251       EU044778
                Clone_21        EU044779
                Clone_151       EU044780
                Clone_1         EU044781
                Clone_95        EU044782
                Clone_30        EU044783
                Clone_126       EU044784
                Clone_112       EU044785

Multiple Sequence Alignment (Fasta format)

Fragment sequences (Fasta format)

Bayesian Inference - MrBayes Tree

(E.bovis_U77084.1:0.09418500,(((E.tenella_EF210326.1:0.00316900,206:0.01511900)0.61:0.00552500,(141:0.01885200,144:0.00936200)0.56:0.00430400)0.59:0.01271000,E.tenella_EF210325.1:0.00176000,(200:0.00373800,69:0.01483000)0.94:0.00796400:0.00000000:0.01370700,60:0.01744200)0.98:0.01311600,((123:0.00713200,334:0.01215600)0.62:0.01357000,(30:0.03136500,151_acervulina:0.00579900,(251:0.01575300,131:0.01597500)0.97:0.00775200,(126:0.02748300,93:0.02483400)0.91:0.00988300,(E.mivati_U76748.1:0.00716800,E.mitis_U40262.1:0.03304200)0.96:0.00860600,((((112:0.03128200,325:0.03040400)0.57:0.00379600,143:0.01279500)0.87:0.00835300,E.brunetti_U67116.1:0.02089500:0.00000000,165:0.01771600)0.63:0.00793200,(E.praecox_U67120.1:0.02178900,(E.maxima_DQ538350.1:0.00673300,(E.maxima_EF122251.2:0.00231300,(E.maxima_DQ538349.1:0.00118100,(E.maxima_DQ640012.1:0.00842600,(E.maxima_DQ538348.1:0.00866000,(E.maxima_U67117.1:0.00827400,E.maxima_EF210322.1:0.00462900)0.95:0.00350000)0.87:0.00550400)1.00:0.00537100)1.00:0.00462100)1.00:0.01412600)1.00:0.01577200)0.98:0.00801200)0.53:0.00591800:0.00000000:0.00000000:0.00000000:0.00000000)0.59:0.01824800)0.99:0.01474700);
 

Maximum Likelihood - PHYML Tree

(E.bovis_U77084.1:0.05704100,(((((E.tenella_EF210325.1:0.00000000,(69:0.01112100,200_necatrix:0.00176500)0.98:0.00638700)0.98:0.00947300,(141:0.01440500,144:0.00585800)0.63:0.00204200)0.28:0.00309900,E.tenella_EF210326.1:0.00221400)0.22:0.00287300,206:0.00989700)0.66:0.00271400,60:0.01961900)0.82:0.00977400,((((131:0.01165000,251:0.01090900)0.88:0.00472500,151_acervulina:0.00337500)0.68:0.00083800,(334:0.00900600,123:0.00496600)0.99:0.01298300)0.45:0.00347800,(((((E.brunetti_U67116.1:0.00960300,93:0.01242900)0.81:0.00760000,30:0.01726000)0.73:0.00705900,126:0.02483800)0.75:0.00312500,(E.mitis_U40262.1:0.02318600,E.mivati_U76748.1:0.00495900)0.53:0.00557800)0.75:0.00152500,((((325:0.02219800,112:0.02354900)0.18:0.00000000,143:0.00945200)0.86:0.00423300,165:0.01307800)0.95:0.00777000,(E.praecox_U67120.1:0.01572200,(E.maxima_DQ538350.1:0.00420100,(E.maxima_EF122251.2:0.00090200,(E.maxima_DQ538349.1:0.00000000,(E.maxima_DQ640012.1:0.00521600,(E.maxima_DQ538348.1:0.00599300,(E.maxima_EF210322.1:0.00275100,E.maxima_U67117.1:0.00560600)0.76:0.00147700)0.62:0.00360200)0.90:0.00323500)0.93:0.00276700)0.98:0.01018400)0.97:0.01064300)0.89:0.00484800)0.90:0.00333900)0.73:0.00105200)0.93:0.00953700);